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In contrast, we found expression of the genes afuB and ompP4 to be differentially expressed from 6 h to 48 h p.i. with the highest observed levels occurring at 6 h p.i. afuB encodes a ferric uptake protein, and ompP4 encodes a lipoprotein reported to be involved in acquisition of heme in H. influenzae [ 61].
Two loci (including Catalase1) were found to be differentially expressed from the GeneChip analysis.
More than 93% of the genes identified from dataset 1 were declared to be differentially expressed from dataset 2 (Table 2).
A Venn diagram was used to identify common genes found to be differentially expressed from the comparison of cases with RET and LOH of PTPRJ and the 262 candidate TSGs identified within common LOH regions in NHL cases [ 8].
In total, 12,254 transcripts were obtained from the wing disc, out of which 5,287 were identified to be differentially expressed from L5D6 to PP and from PP to P0.
We have identified 17 genes to be differentially expressed from a total of 11,173 genes, where ten genes are reported to be down-regulated via epigenetic inactivation and seven genes are up-regulated.
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Thus, for this small fraction of the total genes in the dataset that were studied (that is, only around the 5% that were differentially expressed from the mid-parent), there was differential expression repression in the hybrid with respect to the two parents.
We therefore extracted genes that were differentially expressed from time points 5 to 6 specifically in one differentiation pathway.
The pluripotency mediator Oct4 is differentially expressed from two distinct enhancer regions; a distal enhancer which drives Oct4 expression in murine ES cells and and a proximal enhancer which mediates Oct4 expression in EpiSCs [12].
Imprinted genes are differentially expressed from the maternally and paternally inherited alleles.
Genes belonging to nucleic acid metabolism were differentially expressed from very early time points.
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