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While the estimated binding signal is of good utility and can be conveniently computed for a given dataset using our software package, by extension, we can envision a complete ChIP-seq analysis methodology where the raw ChIP-seq signal would be subjected to a comprehensive multistage decomposition process, taking into account all relevant control datasets at the same time.
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Principal angles can be conveniently computed using singular value decomposition as P 1 ′ P 2 = US V ′ (2).
Following the same authors, C can be conveniently computed as the weighted covariance of y i and R i, i.e.e
An ANP case is conveniently computed by super decisions ANP software.
The suggested method can be conveniently used for reliability-based design of deep mixing columns.
He will be conveniently on hand for television-studio debates on national issues.
EDAM has to be conveniently usable by humans for the purposes of annotation and search.
In R, the package geepack can be conveniently used, see [ 32] for details.
Annotations for a selected set of SNPs can be conveniently exported in tab-delimited format for offline analysis.
Because all parameter sets of a given generation are scored independently, the parameter optimization with an evolutionary algorithm can be conveniently parallelized by running the simulations for different parameter sets on different nodes of a compute cluster.
Already the installation of required software tools can be conveniently achieved from within R, irrespective of the compute platform.
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