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All individual parent maps with ordered SNPs and positions are given in Additional file 4. No linkage map could be constructed for linkage group 19 for the female parent of family Br6 due to very few female-segregating markers being assigned to this linkage group.
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Although linkage maps derived from four hop mapping populations have been published [ 14- 17], a highly saturated linkage map is still to be constructed for this species.
A framework (FW) map was constructed for each linkage group with a likelihood difference threshold of 1000 1.
Finally, a CMAP file was constructed for 10 anchored linkage group maps (Pseudo1-Pseudo10) withethe following four feature types: contig, gap, marker, and STS.
With the advent of molecular genetic techniques and sophisticated statistical tools for linkage analysis, linkage maps have been constructed for some economically important aquaculture species, such as channel catfish, tilapia, Asian seabass, European sea bass, shrimps, and oysters [ 4].
No QTL was detected on chromosome 3 and no genetic linkage was constructed for chromosome X in this family due to a lack of informative markers on this chromosome.
Several genetic linkage maps have been constructed for the crop however these maps often have a much higher number of linkage groups than the expected 11, with uneven marker distribution.
By using GBS, high-density genetic linkage maps were constructed for an autotetraploid alfalfa F1 population.
Linkage maps were constructed for each parental tree (female accession 9.106.3 and male accession 10.159.3).
Linkage maps were constructed for the microsatellites and the SNPs separately using the approach outlined above.
Genetic linkage maps were constructed for each family using bin genotypes.
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