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Although many PTMs are evolutionarily conserved there are also important kingdom-specific modifications which should be considered when expressing recombinant proteins.
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Activated fibroblasts were considered when they co-expressed SMA and vimentin.
Significant stretches of differentially expressed SNPs were considered when the p-value<0.00005.
Differentially expressed genes were considered when fold changes between exponential growth and starvation were greater than or equal to 2-fold and the corresponding adjusted p value was less than 0.01.
Significance was considered when P<0.05.
Genes were considered differentially expressed when expression was at least 4 FPKM for one of the sample types and significantly (Q < 0.05) changed > =2-fold.
Probe sets were considered differentially expressed when expression levels differed significantly with α = 0.05 and a ≥1.5-fold change (Guisbert et al. 2007).
cGenes are considered expressed when read count >5.
Genes were considered expressed when the average normalized intensity was higher than the background level.
Probes were considered expressed when present in at least one experiment, considering a p-value lower than 0.05.
As far as the data evaluation is concerned, an antibody was considered expressed when a minimum of 10% of the gated cells were positive.
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