For example, when two or even all three of the tested algorithms deliver essentially the same result within reasonable error bars for an image, they are to be considered as correct in a qualitative sense with a high likelihood.
Finally, Fig. 16 shows a section of the two maps of Potsdam, Germany, where it is difficult to decide for a human expert whether the found match should be considered as correct or not.
Thus, Top1-hits may not be considered as correct predictions for small ligands that reside in the distant end of an elongated pocket and, therefore, exceed the maximum distance of 4 Å towards the geometric pocket center (Figure 12). Figure 12 Binding site prediction for malate dehydrogenase (PDB: 2cmd).
Open image in new window Fig. 16 A section of the two maps of Potsdam, Germany (around "Galliner Damm" / "Golmer Damm"), where it is difficult to decide for a human expert whether the found match should be considered as correct or not.
If yes, the estimated result will be considered as correct; otherwise, it calculates its location repeatedly using all possible subsets of these locators with one fewer locator, and chooses the subset with the least mean square error to eliminate the locator which is out of the subset.
For the last scenario, if the sensor receives the Loc_ack message of an -locator twice and the type bit in the Loc_ack message is set to 0, this -locator will be considered as a -locator, and the distance measurement based on the Loc_ack message with a shorter response time will be considered as correct (such as in Figure 1(a)).
Correctness was checked by alignment, and a contig is considered as correct if it can be aligned to a reference with 95% similarity by BLAT (Kent, 2002).
The coefficients of variation of replicating the examination were analyzed in various determinations for testing the exactness of the investigation and variation below 10% were considered as correct.
Any argument showing that the X-ray had, or could have, modified their management strategy was considered as correct justification by the authors.
Two targets seem not to be well adapted for docking: cp3a4, whose best pose was considered as correct because it is very close to the limit RMSD of 2 Å.
Second, it has been specified what results of the querying provided by the evaluated systems (i.e., the 'output') are considered as correct ones in accordance to the proposed methodology.
