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Residue pairs that are covalently bonded and those that are within a given cutoff distance of each other are assumed to be connected by linear springs.
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This paper examines a class of networks in which the node signals, assumed measurable, are connected by linear time-invariant transfer functions, and in which a noise signal and/or a known excitation signal may or may not be present at each node.
In these systems, the two ruthenium complexes are connected by linear bridging ligands (B) of programmed lengths, e.g. 1.85, 2.06 and 2.70 nm for 4,4′-bipyridine (bpy), trans-1,2-bis(4-pyridyl)-ethylene 4-pyridyl -ethylenebis[2-(4-pyridyl -ethylenebenzene) (bpeb), respectively, thus allowing a precise control of the interfacial charge-separation distance.
These fluctuation-based interactions are assumed harmonic as if the residues are connected by linear springs.
Every pair of residues closer to each other than the cutoff distance is assumed to be connected by a linear spring.
Cells can be connected by links ('synapses'synapses
Within the channel all 24 water molecules are connected by almost linear hydrogen bonds [ 88].
Next, the determined centers of mass of the target molecule in the first and last frames are connected by a linear line, which gives the first approximation for the trajectory.
The simulation model is based on several FE component models that are connected by non-linear couplings.
The centers of mass of the two motors are connected by a simple linear spring of stiffness k s and initial inter-motor tension T = 0.
These nodes are connected by a semi-linear path.
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