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With the INLA approach, both components of DIC, p D and D ¯, can be computed by setting the option dic = TRUE in the control.compute statement within the inla-call.
Clearly for v, w ∈ V with v ≺ w the matrix entries A v, w) and A w, v) can be computed by setting (6) A (v, w ) : = ω ([ v, w ] ) + A (v, y ) + A (x, w ) - A (x, y ) and (7) A (w, v ) : = ω ([ w, v ] ) + A (w, x ) + A (y, v ) - A (y, x ), where x is the neighbor of v and y is the neighbor of w on path T (v, w).
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To compute, first an unnormalized score value is computed by setting up a comb filter bank for each value of.
In the calculations, both cases are analyzed separately and then the TC is computed by setting the probability parameter (p = 0.5).
The blue dots (connected with the continuous line) denote simulations with β=−1 mN and the red diamonds (connected with the dashed line) are computed by setting β=0 mN.
The critical gap is computed by setting the probability of accepting a time interval to 0.5 from the given equations (Tables 4, 5).
Additional (more conservative and, therefore, lower) hit and false alarm rates are computed by setting an ever-higher standard on the confidence scale for counting IDs.
The initial values, i.e., A ˆ ( 0 ) and B ˆ ( 0 ) required for starting the algorithm are computed by setting the CFO of each user to zero, i.e., f m = 0 ∀m in Equations 11 and 15, respectively.
All quantitative results were computed by setting up at least 10 different networks of each type.
Regions of favorable free energy were computed by setting the free energy threshold such that all tRNAs were found in sliding windows of 150 bp (here threshold=-32.3).
Finally, in order to assess the effect of sample ordering upon correlation estimations (MI), a bootstrapped network was computed by setting 100 cycles and the consensus network was calculated with a Bonferroni corrected q < 0.001[ 54].
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com