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Since the majority of GOS ORFs are partial sequences, we allowed a short sequence to be clustered with a long sequence if it was completely contained within the latter.
The FpBEAS gene encoding the beauvericin synthetase was found to be clustered with a gene (KivRFp) encoding a deduced putative 2-ketoisovalerate reductase (KivRFp).
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The points are clustered with a weighted algorithm considering their uniform curvature and location.
OTUs were clustered with a 97% similarity cut-off using UPARSE (v7.0.1090) (Edgar 2013).
Briefly, 3046 mean points of sc-PDB were clustered with a cutoff of 40% protein sequence identity.
The multiple correspondence analysis demonstrated that pain was clustered with a reduction in number of steps taken and a reduction in contact-seeking behavior.
Thirteen novel human candidates were clustered with a known miRNA.
Nineteen novel mouse candidates were clustered with a known miRNA gene, lending strong support to the validity of those predictions.
For example, if B is clustered with A, and then A is clustered with C, FastBLAST checks that B is a homolog of C before ignoring A and its homologs.
Some of the clusters that were maximally occupied when the trajectory was clustered with a smaller cutoff, merged into larger clusters when the cutoff was changed by 1 Å.
The resulting models of each docking run were clustered with a 5 Å cut-off and the clusters ranked based on the average HADDOCK score calculated over the best four members of each cluster.
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