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GRNs can be clustered using the two proposed strategies.
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The cleaned reads were clustered using the wcd EST clustering tool with an error threshold value of 5 [ 128].
The processed reads were clustered using the MIRA v2.9.26x3 [ 27] assembler with the "denovo, EST, normal, 454" parameters.
A distance matrix that was clustered using the "average" linkage method (using the R hclust function).
Ligand-receptor complex structures were clustered (using the procedure described for quinine).
SSMS and CNVs are clustered using the non-parametric Dirichlet process prior.
The numerous models thus obtained are clustered using the gap metric as the distance measure and representative models are selected.
These structures were clustered using the clustering script available in Schrödinger, based on the RMSD calculated on the ligand atoms and residue atoms 4 Å around them, excluding non-polar hydrogen atoms.
The BoWR for each cycle is clustered using the hierarchical clustering technique.
Each contour group is clustered using the radius of the circumscribed circle and the distance between the centers.
OTU's were clustered using the average clustering algorithm at a cut off of 0.03, followed by singleton removal and resulted in 2001 OTUs.
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