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We performed the analysis only for Arabidopsis sequences, which are supposed to be better annotated.
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Writer says baseball is better annotated & reported than it used to be.
Other less well-characterized genes in these sets may have functions similar to the genes that are better annotated.
This second criterion is based on the fact that abundant probes are better annotated and their intensity signals less prone to noise.
Because the helitron components from the rice genomes were similar and because the japonica genome is better annotated, we focused on the set of japonica elements for description.
While these numbers are likely to change somewhat as the rice genome is better annotated, these preliminary estimates indicate that the potential contribution of LTR retrotranspson sequences to the evolution of gene structure and function in rice may be significant.
Therefore, information on genomic structure of organisms which are better annotated like mouse and human, are used as an information source to cover these gaps in the knowledge of the genome structure.
This query resulted in a number of enrichment analyses from a selected model organism that could potentially be useful and pertinent to research at hand, particularly if the comparison model organism was better annotated.
In fact, Lopez-Bigas et al.[10]'s method may be significantly influenced by the systematic bias generated by the fact that certain genes tend to be better experimentally annotated than others.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com