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A total of 1738 predicted protein-coding genes were identified; however, only a minority of these (38percentt) could be assigned a putative cellular role with high confidence.
The four replicons combined contain 6,631 protein coding sequences (CDSs), of which 4,898 (73.8%) could be assigned a putative function.
Of the predicted protein-coding genes, 1,408 (65%) could be assigned a putative function, whereas 768 (35%) encode hypothetical proteins, with 38 (1.7%) of all protein-coding genes classified as pseudogenes.
Approximately 67% of the 6,717 coding sequences (CDSs) present in the CH34 genome could be assigned a putative function, and 9.1% (611 genes) appear to be unique to this strain.
One EST-rich unigene (17cDNAs) could not be assigned a putative identity.
Collectively, 34 of the 58 uncharacterized TFs could be assigned a putative function via bioinformatics analysis.
Similar(31)
With these criteria, 40,238 (59%) sequences were assigned a putative protein ID, of which 14,838 were unique.
2155 of the A. arilaitensis protein-encoding genes (62.7%) were assigned a putative function.
Escherichia coli strains have been assigned a putative role in the pathogenesis of CD.
Since the discovery of LmrA, a Pgp like half transporter in Lactococcus lactis [10], many bacterial ABC transporters have been assigned a putative MDR function based on bioinformatic classification [11].
Contigs with a best e-value of 10-25 or lower were assigned a putative identity.
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