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The uncertainty will be assessed using bootstrapping [ 92] and acceptability curves will be presented.
The uncertainty will be assessed using bootstrapping, and the results will be presented in acceptability curves [ 91].
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Inter-observer agreement was investigated by means of Fleiss' kappa [6, 7] and respective 95% confidence intervals (95% CI) which were assessed using bootstrapping techniques [8].
The genome alignment was then analyzed under maximum likelihood as implemented in RAxML v.7.04 [47] using the WAG+GAMMA model and clade support was assessed using bootstrapping [48].
The robustness of the inferred tree was assessed using bootstrapping (500 pseudoreplicates) as implemented in PHYML.
Example "The internal validity of the prediction models was assessed using bootstrapping techniques.
Hence, P matrices were computed for all groups and their stability regarding sampling was assessed using bootstrapping.
The 285 groups were analysed separately and combined under maximum likelihood as implemented in RAxML v.7.2.6 [ 76] and clade support was assessed using bootstrapping [ 77].
The robustness of the clades was assessed using bootstrapping (1,000 pseudoreplicates) for the MP analyses and Bayesian posterior probabilities for the BI analyses.
The validity of the selected models was assessed using bootstrapping (18) with 1,000 replicates, each with a sample size of 76, created by sampling with replacement from the original dataset.
Then, the robustness of the inferred tree was assessed using bootstrapping (1,000 pseudo-replicates) by fixing the proportion of invariable sites and Gamma distribution or transition/transversion parameters in the second round.
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