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The output of normalize-by-median.py can be assembled using a de novo assembler such as Velvet, IDBA, Trinity or SPAdes.
It could be assembled "using a screwdriver and hex wrenches from components that fit into a couple of large duffel bags and some cardboard boxes".
For example, DNA-functionalized AuNPs can be assembled using a linker strand that contains an aptamer sequence for adenosine, D5.
Bacteria, on the other hand, have a much more diverse glycome, that could only be assembled using a correspondingly larger number of building blocks.
In theory, a genomic reference population can be assembled using a sub-population of animals with genotypes and phenotypes used to generate a genomic prediction equation (Berry et al., 2014; Pryce et al., 2014a and 2014b).
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The twenty-two new genome assemblies (Table 1) were assembled using a combination of the ARACHNE assembler [32], [33] and a novel "assisted" assembly method that used alignments with the human, mouse, and dog genome assemblies to improve long-range contiguity.
The Roche/454 reads were assembled using a Newbler assembler [ 24] (454 Life Sciences).
The sequence reads from each arm were assembled using a GS assembler 2.7 (Roche) with the parameter '-large −vt' to remove the vector sequence.
US exit polls are assembled using a mathematical technique known as cluster sampling.
Then, all the clean reads were assembled using a de novo assembly program Trinity [ 54].
The data was assembled using a de novo assembly approach using both pcap [ 23] and newbler (Roche 454 software package) assembly algorithms to assemble the data.
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