Sentence examples for be annotated with effect from inspiring English sources

In particular, a fragment activity may be annotated with effect and precondition.

Any process action can be annotated with a precondition.

Each SNP was annotated with Variant Effect Predictor (VEP) perl script tool available in Ensembl http://www.ensembl.org/info/docs/tools/vep/index.html [ 56], using Ensembl database v. 72.

Analysis was using an in-house pipeline, where FASTQ files were aligned using Burrows–Wheeler Aligner 1 and indexed with SAMtools (http://samtools.sourceforge.net/). 2 Variant calling was performed with VarScan (http://varscan.sourceforge.net/), 3, 4 and VCF files were annotated with Variant Effect Predictor (http://www.ensembl.org).org

Variants were annotated with the Ensembl Variant Effect Predictor62.

Thus, the goal of our work is twofold: i) to create a gold-standard corpus of Spanish social media messages, which are annotated with drugs and their effects and ii) to develop a system to automatically extract drugs and their effects (ADRs as well as drug indications) from Spanish health-related social media sites.

SNP and indel effects were annotated with snpEff, and we manually re-annotated gene symbols for the SNPs using the latest gene annotations of the M129 and FH reference strains from NCBI.

All identified DNA sequence variants are annotated with the following information: 1) potential effect on the resultant protein(s); 2) annotation within the Catalogue of Somatic Mutations in Cancer (COSMIC) database [ 29]; and 3) annotation within the Single Nucleotide Polymorphism database (dbSNP) [ 30].

Variants were annotated with the Rapid Understanding of Nucleotide variant Effect Software (RUNES v1.0) [ 23].

Variants were annotated with the Rapid Understanding of Nucleotide variant Effect Software (RUNES, v3.3.5) [ 6, 11, 12].

The putative functional effects of SNPs and indels were annotated with the ANNOVAR package99.