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Among them, 19 could not be annotated using the known annotation databases.
About 77% of assembled contigs could not be annotated using the public databases [23].
New CYPs can be annotated using the BLAST search function.
A fraction (ranging between 14% and 21%) of American and Chinese chestnut unigenes that could not be annotated using the Arabidopsis proteome could however be annotated using the Populus proteome.
On the other hand, only a small fraction of sequences could be annotated using the Swiss-Prot database, which harbors manually annotated and reviewed protein sequences.
These proteins represent examples where the co-conservation network allowed the assignment of function to proteins which could not be annotated using the PPI network.
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Experimental pairs were annotated using the annotated unigene transcriptome library.
The genome sequence was annotated using the prokaryotic annotation pipeline at the National Center for Biotechnology Information, Bethesda, USA (NCBI).
The corpus consists of scientific abstracts that were annotated using the same annotation guideline used for the CEMP task.
The assembled sequences of the three genomes were annotated using the GenDB annotation system [ 100].
The draft genome assembly has been annotated, using the genome annotation pipeline MAKER [ 14, 15].
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