The genes included in those three topologies were annotated by gene ontology (GO).
Breast cancer genes are annotated by gene symbol, description, aliases and sequences.
The regulated transcripts were annotated by gene ontology (GO) [ 24] and classified into hierarchic categories.
(B) All editing sites from Figure 1 A are annotated by gene and site as in Savva et al. [ 9 ].
Of these genes, 78 were annotated by gene ontology [ 24], which described the genes in terms of their biological processes, cellular components and molecular functions in a species-independent manner.
There are 6,140 genes can be annotated by all four gene annotation systems, suggesting these genes are well studied.
The network can also be annotated by incorporating user-uploaded gene expression profiles.
Among the analyzed Unitrans, 73% could be annotated by homology to known genes in the UniProt (Plant) database, particularly to those from Vitis, Ricinus, Populus and Arabidopsis.
The resulting reads were assembled into 77,048 unique sequences, of which 28,243 could be annotated by Gene Ontology (GO) analysis, while 48,805 transcripts lacked GO annotation.
Each gene is annotated by its gene code (G), reaction (R) and KEGG pathway membership (P).
