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The work will be aligned to two use cases: (1) Collaboration on educational environments in non-developing countries.
An example of a positive fold result is shown in Fig. 3. Variola protein NP_042071.1 can be aligned to two SCOP fold templates with confidence scores >50%.
To call an inter-chromosomal rearrangement event, at least a 20 kb sequence from a single de novo assembled contig must be aligned to two different chromosomes.
Poplar and soybean have both undergone recent whole genome duplications, and these events can be detected by the significantly larger amount of chestnut genomic sequence that can be aligned to two separate locations.
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ISG15 from different origins were aligned to two Ub molecules (Figure 1).
Suppose that two adjacent sequence positions are aligned to two template positions j1 and j2 (j2> j1+1), respectively.
Moreover, the spectrograms were aligned to two reference peaks: (3883.766, 7766.166).
We extracted the human transcript sequences (mRNA, cDNA, EST) which were aligned to two different RefSeq mRNA sequences.
For example, in the initial assembly, Contig10 was aligned to two genomic blocks on rice chromosome 1, separated by over 35 Mb.
Reads that aligned equally well to multiple locations in the reference genome were counted fractionally (i.e., a read that was aligned to two locations was counted as half a read at both locations).
After removing adaptor sequences, clean reads were aligned to two modified references with BS-seeker 2 v. 2.0.8 using Bowtie 2 v. 2.1.0 in local alignment mode and allowing no more than four mismatches per read.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com