Sentence examples for be aligned to reference from inspiring English sources

The new sequence has an unusual N-terminal extension of ∼70 residues that cannot be aligned to reference G-proteins and which is characterised by proline-rich repeats.

Inconsistent color patterns cannot be aligned to reference genome and thus are discarded, improving the quality of the aligned colorspace sequences.

To convert these data into useful information, the sequencing reads must be aligned to reference genomes so that coverage – the number of aligned reads at each base pair – can be calculated.

Each marker protein was aligned to reference markers using MUSCLE [ 66] and the 40 individual alignments were concatenated to a single alignment.

The trimmed reads were aligned to reference sequence by means of BWA with default parameters (v0.7.13).

Sample sequences were aligned to reference sequences obtained from the UCSC Genome Bioinformatics website (http://genome.ucsc.edu/index.html) using the ClustalW program in order to identify nucleotide changes.

Individual sequence reads were aligned to reference genomes from Genbank, and assembled into contiguous sequences (>95% identity over 30 nt) using Sequencher.

The sequences were aligned to reference sequence NT_010718.16 (Table  2).

Trimmed reads were aligned to reference genome sequences with Tophat v1.4.1 splice-junction mapper [ 107].

Contigs were aligned to reference genomes using BLAT [ 30] and viewed using the UCSC Genome Browser [ 31].

Filtered reads were aligned to reference genome P. fluorescens F113 [GenBank: NC_016830] with Bowtie v2 [ 45].