While a focus of this field has been to identify subgroups of breast cancer patients benefiting from particular types of systemic therapy, response to radiotherapy has equally been addressed by microarray studies, for example, in diseases treated with radical radiotherapy such as cervix cancer [ 9].
It is also likely that other effects on H. pylori genes could be occurring, which could be addressed by discovery studies using proteomic or microarray analyses.
Besides mQTLs, any quantitative association between a variable of interest and methylation at these polymorphic CpGs cannot be ascertained unless the confounding effect of the genetic polymorphism can be addressed by independent methods such as SNP genotyping microarray.
Protein microarrays allow for exploration of hypotheses that cannot be addressed by standard methods.
This problem should be addressed by professionals.
The case reported here has been addressed by high-density microarray analysis, and revealed different break points and chromosomal segment sizes than the previously published.
Microarray batch effects visible from MDS plots were addressed by adjusting for the microarray lot number as a covariate.
121 miRNAs present in both microarray platforms had no detectable measure by small RNA-seq in any of the three biological replicates, whereas 147 detected by small RNA-seq had not been addressed by any of the microarray platforms.
3,972 genes represented in either of the 3 microarray platforms had no detectable measure by DGE in any of the three biological replicates, whereas 130 detected tag sequencing targets had not been addressed by any of the microarray platforms.
The issue of cross-hybridisation of related genes on cDNA microarrays was addressed by Miller [ 9].
In the previously described microarray kidney atlas, this was addressed by profiling individual kidney subcompartments [ 5].
