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PEANuT can be accessed under: http://sourceforge.net/projects/peanut-cyto and was implemented in Java.
viPEr can be accessed under: http://sourceforge.net/projects/viperplugin/ viPEr has three main search options: ' A to B ': ' A to B ' connects two selected nodes with each other.
The phylogenetic trees shown in Figures 2 and 3 have been deposited in TreeBASE and can be accessed under http://purl.org/phylo/treebase/phylows/study/TB2 S15635.
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The complete set of GWAS meta-analyses results can be accessed under following link: http://www.twinsuk.ac.uk/wp-content/uploads/TUK_G-EAR_GWAS_hearing.zip, last accessed on 7 July 2014.
Microarray data were submitted to NCBI Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/) and can be accessed under GSE44848.
The pre-publication history for this paper can be accessed here: http://www.biomedcentral.com/1471-244X/13/237/prepub Under the direction of the authors, support with the literature search, data extraction, writing of the outline, initial draft of the manuscript and collation of author comments was provided by Alyson Bexfield, PhD, and Debby Moss, PhD, employees of Caudex Medical, Oxford, UK.
For the box-and-whisker plot in Figure S1C, log2(normalized read depth per transcript + 1) were plotted (data can be accessed at http://intermine.modencode.org/ under accession ID 4006).
The pre-publication history for this paper can be accessed here: http://www.biomedcentral.com/1471-2407/10/94/prepub PJC acknowledges support under NIH EB1842 and NIH CA136590-01, Macknowledgesgesupportrt from the Neag Foundation.
The pre-publication history for this paper can be accessed here: http://www.biomedcentral.com/1471-2458/10/156/prepub The project was conducted under the support of the Center for Disease Control and Prevention of Lianping County.
The pre-publication history for this paper can be accessed here: http://www.biomedcentral.com/1472-698X/11/7/prepub This research was conducted under the umbrella of SWASH+.
The pre-publication history for this paper can be accessed here: http://www.biomedcentral.com/1471-2288/11/118/prepub This research was conducted under contract from the American Nurses Association ANAAmerican Nurses Association ANA
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