We use V to refer to the entire set of terms in the ontology; thus, with a minor abuse of notation, we write that T ⊆ V and P ⊆ V. Typically, V is a large graph with tens of thousands of nodes, T is a small graph with about 10 100 nodes, whereas P depends on a particular classifier under evaluation.
The results are a smaller graph (not shown), equal to Figure 2 subgraphs SG-canti and SG-fulc plus 2 amino acids, (E34, E35).
A motif is a small connected graph graph
Table 4 Summary of descriptor improvement Descriptor Summary Chi Depth-first search is used instead of SMARTS pattern matching DetourMatrix Molecular graph is divided into a small graph by articulation points Framework Specialize to Framework descriptor MolecularId Cache parts of the calculation to avoid its redundancy.
So, searching for a monomer in a polymer is searching for a small graph in a larger one.
For example in the breast cancer dataset, there was a small component of the graph representing genes whose expression is lower in basal-like and ERBB2-positive tumours (Additional file 2).
The resulting graph is a small world network with diameter 6 and average shortest path 2.57.
Eifrem says even though graph databases are a small piece of the overall database market, it's growing fast, and as his own company grows, he says that has been attracting the attention of investors.
The micro-community is a small dense group or a sub-graph or isolated node that consists of one or more connected dense network or pairs with certain energy.
These algorithms usually follow a multilevel strategy, where a large graph is first coarsened to a smaller graph by recursively contracting multiple vertices into one vertex, and then the small graph is partitioned applying a method like the Kernighan Lin algorithm, and finally the partition is mapped back to the original graph with some refinement.
