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We therefore consider it to be a false prediction.
This suggests that the novel target gene may be a false prediction by Genescan.
The latter appears to be a false prediction as judged from the large distance to cluster 4 containing the experimentally confirmed BtuB.
For each intergenic region we report the probability that a region of its significance or better will be a false prediction, instead of reporting the probability that a negative control will appear at this significance or better.
A dense cluster detected by the traditional methods by blindly treating all protein-protein interactions in the PPI network to be able to occur simultaneously may be a false prediction as it may contain several mutually-exclusive interactions.
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In the remaining 11 cases, the predicted TSIP may have been a false prediction or, alternatively, the inserted sequence may have contained difficult to amplify sequences.
EDG1 was a false prediction because the term 'HLA' matched an author (Hla T. Maciag T. J Biol Chem 1990;265 9308-13) and the term 'T cell' matched 'mutan t cell'.
For strict accuracy (SA), a true prediction is scored iff the true and predicted termsets are identical; a false prediction is scored in all other cases.
Here, Pindel [ 22] identified a deletion candidate causing a potential frameshift, which our post-classification method predicted to be a false one; this prediction was confirmed by one of the Sanger sequences.
Another instance of Case 1 is where all the genes associated with the metabolic reaction are viable; it is also uncertain if the metabolic reaction is essential to the metabolic network (true negative) or if the negative prediction is indeed a false prediction.
Thus, it is likely a false prediction.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com