Sentence examples for batch effects were minimized from inspiring English sources

Batch effects were minimized using COMBAT [27] with the non-parametric option, floored at 0.00001, and log2 transformed.

Batch effects were minimized by the sva (Surrogate Variable Analysis) package of the Bioconductor suite (http://www.bioconductor.org) for the R statistical programming language (http://www.r-project.org).org

While these differences in pre-processing were not ideal, the deleterious effect of such differences and batch effects was minimized by analyzing all experiments independently, without combining expression scores from different studies.

Thus, novelty effects were minimized.

Batch effects were removed by aligning the within-batch medians for all measurements.

Although some of these batch effects can be minimized or even prevented with appropriate precautions and experimental design, certain batch effects are unavoidable.

(3) Can batch effects be controlled?

Batch effects are not the only source of unwanted variance.

The negative effects of shear stress, high concentration of feed and long holding time in batch operation process were minimized by CBC-CFMF combined with gas bubbling technique.

Color channel bias, batch effects and difference in Infinium chemistry were minimized by application of All Sample Mean Normalization (ASMN) algorithm [ 19], followed by Beta Mixture Quantile (BMIQ) normalization [ 20].

Sampling was done randomly from a homogenized batch of eggs, so possible genetic and/or maternal effects on the results of the trial were minimized.