Sentence examples for batch effects were corrected from inspiring English sources

Cross-cohort batch effects were corrected using the COMBAT empirical Bayes method (Johnson et al, 2007).

Cross-cohort batch effects were corrected by using the COMBAT empirical Bayes method [ 11].

Batch effects were corrected by applying parametric empirical Bayes method (Johnson et al, 2007).

Empirical results obtained through application of the SampleNetwork R function to many datasets indicated that as outlying samples are removed, data are normalized, and technical artifacts (e.g. batch effects) are corrected, Z. K and Z. C exhibit a progressively linear, inverse relationship.

Finally, the batch effect was corrected using ComBat normalisation method [ 40].

Batch effect was corrected using ComBat with default options through the Bioconductor package sva 3.10 [ 52, 53].

The microarray data were normalized by a quantile normalization procedure by using the bioconductor package affy, and batch effect was corrected by using the ComBat algorithm [ 28].

Microarrays were normalized using Robust Multiarray Average (12), and the batch effect was corrected using the distance-weighted discrimination method (13).

Batch-effect was corrected using the algorithm ComBat implemented in MSPrep[ 35].

As summarized Table 1 none of the PCs were associated with the batch effects anymore for the batch corrected data; and the CpGs that were associated with the batch effects were reduced to a few (12, 25, 23 in Dataset 2 and 2, 6, 8 in Dataset 3 for QNβ, lumi and ABnorm normalized data, respectively).

Batch effects were removed by aligning the within-batch medians for all measurements.