Sentence examples for batch effects due to from inspiring English sources

Potential batch effects (due to different hybridization dates) were also removed using ComBat [ 23].

Data were further normalized by an empirical Bayes approach (Combat) to remove potential batch effects due to data acquisition.

We used the empirical Bayes framework procedure ComBat [ 28] as implemented in the R package sva [ 29] to remove batch effects due to different datasets.

The batch effects due to multi-datasets were removed by an empirical Bayes method using the Bioconductor package sva [ 26, 47] (Additional file: Fig. S1).

The housekeeping gene Beta-actin (ACTB) expression showed that there were large batch effects due to institutional variations among the training datasets (Fig. 1a, c).

The primary objective of GLMseq analysis was to determine the amount and significance of the main resistance effects, setting aside any secondary batch effects due to transcript-specific interactions between batch effects and resistance effects.

However, even after these standard normalization steps, hierarchical clustering indicated a persistent batch effect due to array print batch combined with the channel in which the universal reference sample was.

Differentially expressed genes were statistically evaluated by Partek® multi-way ANOVA, controlling for the batch effect due to scanning date.

We observed using PCA that there was a batch effect due to differences by hospital at which sample had been collected, thereby dividing the EPICOLON cohort into three separate subgroups.

In addition to the fixed effect covariates described in the method section, our mixed model specified sample plate, well, and sentrix position as random variables to account for batch effect and random effects due to sample allocation on the Infinium BeadChip in the array experiment.

In contrast to batch mode, osmotic or toxic effects due to high substrate concentrations can be avoided in a fedbatch culture.