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As a batch algorithm using the Hough transform [5], dynamic programming [6] or maximum likelihood estimation [7], TBD could be implemented.
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We then removed batch effects using the nonparametric CombatR algorithm [ 20] and then retained only the most variable genes, based on standard deviation of each gene, as suggested by Hahne and Huber [ 21], using GeneFilter [ 20] R package.
Although numerous investigations have compared gene expression microarray platforms, preprocessing methods and batch correction algorithms using constructed spike-in or dilution datasets, there remains a paucity of studies examining the properties of microarray data using diverse biological samples.
The paper also investigates the situation where more than one type of bin are used and provides a heuristic for packing a batch of cartons using the genetic algorithm.
Singular value decomposition (SVD) and a batch algorithm are used.
Batch-effect was corrected using the algorithm ComBat implemented in MSPrep[ 35].
To do this, the algorithm uses a combination of the mathematics of complicated networks and Boolean algebra to define various regions on a batch of nanotubes.
A batch image-processing algorithm was developed using the MATLAB image-processing toolbox.
Batch effects were removed using the ComBat algorithm in the SVA software package (19).
Batch effects were removed using the ComBat algorithm in the sva package [ 30].
Batch effects were removed using the BFRM algorithm, and MP1 expression levels were examined.
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