Sentence examples for basis of the annotation from inspiring English sources
A functional annotation of differentially expressed genes was performed on the basis of the annotation provided by the HGU133a Bioconductor library (version 1.14.0).
These 58 and 68 SNPs were in or near 47 or 59 unique genes on the basis of the annotation provided by Illumina, genome build 36.1.
In order to gain insight into the common and differential responses of Mφs and DCs to M. tuberculosis infection, we performed gene functional classification on the basis of the annotation resources provided by GeneOntology (GO) [21] and Kyoto Encyclopedia of Genes and Genomes (KEGG) [22], [23].
qRT-PCR primers were designed on the basis of the annotation of the RAP-DB (Additional file 5: Table S4).
On the basis of the annotation, we found the genes encoding all of the enzymes involved in biosynthesis of triterpenoid backbone, mostly in roots (including MVA and MEP pathways).
On the basis of the annotations assigned here, we can see that the B-genome contains 3,276 transposable elements (TE's), of which 1,470 are located in the B-unChr_random sequence.
To obtain a global view of the functions of the genes corresponding to the sense-AFAS transcript pairs showing altered expression balances among normal and cancer cells (shown in Table 1 and Additional file 2: Table S4), we classified the known functions of the sense genes on the basis of the annotations given in the Atlas Human Cancer 1.2 Array (Additional file 2: Table S5).
The genes JDM1_2771 (gand1) and JDM_2780 (galR2) can be easily re-annotated to galR and rafR, respectively, on basis of the specific annotation that is available for L. plantarum WCFS1.
These findings suggest a greater degree of metabolic flux in ribosomes from UN animals, however it is difficult to understand the significance of these observations given the fact that on the basis of the current annotation only about 16% of the ribosomal proteins show changes in expression levels.
Among the above associated 492 associated with gemcitabine IC50, we observed that 100 unique SNPs, located within or near 78 genes on the basis of the Illumina annotation were associated with variation in the expression of 296 probesets (220 unique genes) with a cutoff of p-values <10−6.
Pairs of homologous genes were tentatively selected on the basis of the gene annotation and then confirmed by performing BLASTP alignments of the correspondent predicted proteins.
