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Subsequently, representative species were selected on the basis of sequence completeness.
While all homologs were initially collected, representative species for each taxonomic major group were selected for phylogenetic analyses on the basis of sequence completeness which was not consistent across all genomes sequences.
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The concepts of convergence, Cauchy sequence, completeness and continuity on a GMS are defined below.
This topology yields the following notions of convergence, Cauchy sequence, completeness, and continuity.
The reason why the aut gene was not detected in those strains is because the levels of sequence identity and sequence completeness were below the default cut-off of PathoProT (50 % Sequence Identity and 50 % Sequence Completeness).
Besides the assessment of DNA purity and sequence completeness, mapping also provided information about the fidelity of the newly generated sequences.
CEGMA software [ 34] was used to assess the sequence completeness of the assembly by estimating the presence and completeness of 248 ultra-conserved eukaryotic genes.
The sequence completeness of the assembly was estimated with CEGMA software [ 36] and TargetIdentifier [ 37].
On the basis of the completeness of this health area level database (online Technical Appendix), we selected 3 regions—Tahoua, Tillabery, and Dosso for further analysis.
We further validated our assembly by assessing the sequence completeness and information content of our set of transcripts.
*Denominators vary on the basis of completeness of responses or reflect subsets.
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