Sentence examples for basis of nucleotide sequencing from inspiring English sources

On the basis of nucleotide sequencing of capsid/premembrane protein (C/PrM) and envelope (E) genes, 5 virus genotypes have been identified, including genotypes I to III (GI, GII, GIII).

Twenty-two ASFV genotypes (I XXII) have been identified on the basis of nucleotide sequencing of the variable 3′-end of the B646L gene encoding the major capsid protein p72 (2, 3 ).

On the basis of nucleotide sequences obtained, the pairs of species-specific primers were designed for each species studied.

Primers designed on the basis of nucleotide sequences conserved in DnaK and GroEL from Gram-positive organisms were used to PCR amplify internal regions of the cognate genes from the anaerobic ruminal cellulolytic bacterium Ruminococcus flavefaciens FD-1.

On the basis of nucleotide sequence homology, the plasmid pAA belongs to the IncFIIA family.

On the basis of nucleotide sequence and predicted genome organization, GBV-C is classified in the family Flaviviridae [16], [17].

Multiple sequence alignments, protein translation and phylogenetic analysis were performed on the basis of nucleotide sequences using the software MEGA4 [37] and BioEdit (http://www.mbio.ncsu.edu/BioEdit/bioedit.html).html

For the transition/transversion bias, the fourth prior, we chose to take a bias directly calculated on the basis of nucleotide sequences by the software MEGA4 [45] (61.432 for twelve sequences/254.911 for nine sequences/9.405 for eight sequences/15.683 for seven sequences; this value is calculated for a heterogeneity rate of 0.26).

On the basis of nucleotide sequences, 6 aa substitutions were predicted in the core protein of 5 isolates.

WHO confirmed that the outbreak had been caused by WPV imported from Pakistan on the basis of nucleotide sequence data.

The Photorhabdus isolates recovered from nematodes and from the patient's hand were compared on the basis of nucleotide sequences of 2 housekeeping genes, glnA and gyrB.