Sentence examples for basis of multilocus sequence from inspiring English sources
This strain has been recently suggested for classification with 3 others as a subspecies within the species R. conorii on the basis of multilocus sequence typing (4 ).
On the basis of multilocus sequence analysis of chromosomal housekeeping genes, this group was found to be genetically distinct from other B. garinii strains.
At >62.50% similarity, 3 main clusters were found that matched with existing species on the basis of multilocus sequence analysis (ITS, CDC42, BT2, and ACT1), i.e., F. pedrosoi, F. monophora, and F. nubica.
An onsite investigation of the potential exposure site found the vector, Ornithodoros hermsi ticks, and 1 chipmunk infected with spirochetes, which on the basis of multilocus sequence typing were identical to the spirochete isolated from the patient.
On the basis of multilocus sequence data and allelic profiles for 53 specimens, analysis showed strong LD among 25 polymorphic loci, suggesting an overall nonpanmictic population structure of C. hominis.
This subpopulation was initially designated lineage C1 (Homan et al. 2002) and later renamed to clonal complex 17 (CC17) on the basis of multilocus sequence typing (MLST) data analysis (Willems et al. 2005, 2011).
Populations 1 and 2, 3 and 4, and 5 corresponded with species borderlines established recently by Najafzadeh et al. (10, 14 ) on the basis of multilocus sequencing with ITS, CDC42, BT2, and ACT1.
The genomic taxonomy is defined on the basis of an integrated comparative genomics approach that include, e.g., the analysis of multilocus sequence analysis (MLSA), supertree analysis, average amino acid identity (AAI), average nucleotide identity (ANI), genomic signatures, codon usage bias, metabolic pathway content, core and pan genome analysis.
All the strains had previously been characterized by means of multilocus sequence typing (MLST).
The development of multilocus sequence typing (MLST) schemes for Leptospira spp. is addressing this issue.
Application of multilocus sequence typing (MLST) identified 8 sequence types (STs or clones), with STs 1 and 23 predominating.
