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Genes were classified on the basis of functional categories and pathways by using GeneSpringGX software and Genotypic Biointerpreter Biological Analysis software (Genotypic Technology Pvt. Ltd).
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To test this possibility, we investigated functional difference between chicken macro- and microchromosomal genes on the basis of the frequencies of appearance of functional categories.
The genes we identified (see Additional file 1), which fall within a broad range of functional categories, appeared to provide the molecular basis for its pleiotropic effects.
The selected genes he has detected fall into a handful of functional categories, as might be expected if people were adapting to specific changes in their environment.
Graphical representations of functional categories are shown on Figure 4.
The genes showed a wide range of functional categories.
The proportion of functional categories varied between colonies.
The distribution of functional categories is showed in Figure 5.
Enrichment of functional categories in these clusters was assessed according to the MIPS functional categories annotation [ 17, 39].
Normalized gene expression data were subjected to analysis of functional categories using PageMan and MapMan functional categories [ 56, 57].
On the basis of GO functional categories transcripts were assorted into several groups.
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