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Another raised question is about the molecular basis of expression divergence.
However, little is known on the molecular basis of expression divergence and evolution among rice genotypes with contrasting phenotypes.
To explore the evolutionary basis of expression divergence within and between Nipponbare and Pokkali under normal and high salinity stress, we further analyzed the effect of both duplication and mobile elements on expression divergence.
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Thus, a context-specific analysis of expression divergence is more informative.
Some studies used the Euclidean distance of expression profiles as a measure of expression divergence [5], [28], [29], [30].
Due to the significant contribution of expression divergence to phenotypic variation, we further analyzed the mechanism how these expanded genes were retained by expression divergence.
These duplication or transposition events provided a basis for expression divergence.
Thus, molecular and evolution basis of gene expression divergence in sorghum and Arabidopsis might be different.
To elucidate the genetic basis of gene expression divergence, we compared the ASE in parental and hybrid samples to identify cis- and trans-regulatory divergences (fig. 4 A).
To explore the molecular basis of gene expression divergence within and between BT×623 and Keller, we further analyzed the effect of both gene duplication and mobile elements on expression divergence.
We have detected more than 5,000 differentially expressed genes under normal or NaCl stress conditions between Nipponbare and Pokkali, and they were classified into six groups as shown in figure 3 A and B. To explore the molecular basis of their expression divergence, we surveyed the SNP variations in their 1-kb promoter regions upstream of start codon of genes.
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