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To understand the basis of allelic differences in the M gene, we compared the sequence of CsACS2 in 28 cucumber accessions (Table 1).
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Even for model species the distribution of allelic differences in a particular population will be unknown, so it is this empirical basis for identifying the optimum clustering threshold that makes this protocol valuable.
Therefore, caution regarding the origin of allelic differences should be considered when conducting re-sequencing studies.
Our ability to detect a number of allelic differences in the three Nipponbare rice individuals surveyed suggests that allelic differences should not be readily dismissed in SNP assessments of rice diversity.
It is very likely that several of the QTLs detected in this region were generated by the action of allelic differences at the Sd1 locus.
Despite this limitation, we detected allelic differences in CREB1 binding at 6 of 9 predicted imbalanced sites providing strong supporting evidence of allelic differences in protein binding.
In a diallel sample, there are two sets of allelic differences to take into account.
Non-Williams ESTs were included to allow the identification of allelic differences between the various genotypes.
Principal coordinates analysis showed little evidence of allelic differences across the three groups (results not shown).
The molecular basis for allelic differences in the involvement of specific OsGLPs in QTL-based resistance, however, is still unknown.
Similar interpretations could be made when reasoning on the basis of allelic instead of genotypic richness.
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CEO of Professional Science Editing for Scientists @ prosciediting.com