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The effects on the beam quality are illustrated providing the basis for the alignment procedure and jitter tolerances.
Using multiple reference sequences as a basis for the alignment of the candidate sequences significantly improves alignment quality.
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The major loci were scanned on the basis of the alignment of 11 mitogenomes from four populations for proper molecular markers.
To examine intrafamily diversity pattern for each family, we performed network analyses on the basis of the alignment of full length sequences.
We used this structural alignment as a basis for the sequence alignments shown in Fig. 1f and Additional file 1: Figure S1, S4, as well as for superposition of multiple structures in Additional file 1: Figure S5.
To check sensitivity of additional taxon sampling from a number of the lophiiforms to the results reported in Yamanoue et al. [ 27], we used their pre-aligned sequences as a basis for further alignment with the 33 sequences.
To check sensitivity of additional taxon sampling of a number of the lophiiforms to the results reported in Yamanoue et al. [ 27], we used their pre-aligned sequences as a basis for further alignment with the newly determined sequences from 33 lophiiforms.
Based on these clades and considering the major clades of [ 23], groups consisting of a maximum of 50 sequences were selected as basis for the compilation of ITS alignments.
Consensus contigs developed across all 27 genotypes served as the basis for alignment to detect SNP.
The Evolution Theory speculates that two queried proteins may have a common evolutionary ancestor and serve as the basis for sequence alignments, which determine whether there exists sufficient similarity between two sequences.
It is in particular the basis for the currently available genome-wide alignments, which in turn underlie a wide variety of subsequent analyses.
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