Suggestions(1)
Exact(4)
PolyA tails were searched for by finding the first run of at least 9 A's after the first 350 bases of the sequence.
When the nuclear ribosomal 18S end or 28S start was within the first or last ∼25 bases of the sequence in the record, it became difficult for the ITSx script to identify it with confidence.
Primers were designed in a way such that 1) size of the target PCR amplicon was about 100 bp, 2) the target SNV was within approximately 40 bases of the sequence start site, and 3) all primers for the same patient were compatible for multiplexing.
For each dinucleotide w, we define the set M w as the set of all positions i such that a nucleosome starting at i would cover the subsequence w, and we define m w i as the number of appearances of w in the sequence covered by a nucleosome starting at i (as with our biophysical models, we exclude the leading and trailing 3 bases of the sequence each nucleosome covers).
Similar(56)
Two pairs of primers were designed, based on the sequence of the DNA polymerase gene of abalone herpesvirus.
The categories of
The amino acid sequence of standard 2 was based on the sequence of the recombinant plasmid.
The sequences of the primers numbered based on the sequence of Hodza strain (AY223475) (Table 1).
PCR amplifications were based on the sequence of the SCCmec of WKZ-2.
The tagged ST556 mutants were assembled in 96 sets of 55 mutants based on the sequence identity of the tags.
The current version of GeneWaltz are based on the sequence comparison of two species.
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