Sentence examples for bases of each binding from inspiring English sources

We also assessed disease/trait overlap using the central 200 bases of each binding site to control for differing size of binding sites and found very similar results (Additional file 1: Table S6).

The cross-strand interactions create synergy between neighboring finger motifs for the recognition of the 5'- base of each triplet-binding site.

For this purpose, enrichment was defined as the ratio of IP reads to input reads, with reads summed over the 50 base pairs at the center of each binding peak.

First, only alignments that had both putative exons and introns within 100 bases of the binding site were retained.

However, the neighbouring bases of these core-binding motifs also affect the binding of a TF to a cis-element.

It may also have arisen from the specific geometry of the interaction between ZF residues and the bases of the DNA-binding sites.

This 'transmission switch' includes W6.48 (which interestingly is also located close to the base of the binding pocket of many GPCRs) and also involves L5.51, P5.50 and L3.40.

The Watson Crick base pair C1409 G1491 forms the base of the drug binding pocket.

IsdB-N2 contains one Trp residue (W392), which resides at the base of the heme binding pocket.

To rapidly analyze the dinucleotide preferences, we developed a tool to visualize the extent to which a model based on independence of binding of individual bases (PWM) fails to describe the observed distribution of nucleotide pairs at all base positions.

In addition to commonly used GFP-like proteins, unrelated types of FPs on the base of flavin-binding domains, bilirubin-binding domains or biliverdin-binding domains were designed.