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To test whether age-dependent differences in the transcriptional program induced by vaccination were associated with altered gene expression levels pre-vaccination, we directly compared baseline gene expression levels in young versus older adults and identified 40 differentially expressed genes (Supplementary Table 2).
Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories.
Geeleher, P., Cox, N. J. & Huang, R. S. Clinical drug response can be predicted using baseline gene expression levels and in vitro drug sensitivity in cell lines.
Comparing baseline gene expression levels and biological response using the average of these 15 genes revealed a significant negative correlation (R = −0.7208; p = 0.0016) (figure 2B).
Since e.g. IFNα is known to desensitize further responses to IFNs, the presence of low endogenous IFNs could block IFNß-induced signals.[33], [34] This explorative pilot study suggests a predictive value of baseline gene expression levels of IFN-induced genes.
We identified 1953 genes that differed in baseline gene expression levels.
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In this independent study group we confirmed the negative correlation between baseline gene expression level and treatment induced biological response (p<0.0085 and R = −0.4719).
This analysis demonstrated that the mean baseline expression of the 28 IFN response genes negatively correlates with the in vivo IFN-induced response levels (p = 0.0049 and R = −0.6657) (Figure 2A), suggesting that the baseline gene expression level of these genes could serve a role as predictive marker for the pharmacological responsiveness to IFNß.
Although pretreatment with either cytokine inhibitor had no effect on the baseline gene expression level of aggrecan in AF cells derived from degenerative tissue, type I collagen baseline gene expression was reduced in these cells.
In addition, these constructs are also associated with a low baseline gene expression level allowing the study of genes whose expression may be incompatible with the generation of constitutively expressing clones.
It is also worth noting that treatment with IL-4RAb had no effect on the baseline gene expression level of MMP3 in AF cells derived from nondegenerative tissue, suggesting that the maintenance of baseline MMP3 gene expression occurs independently of IL-4.
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basal gene expression levels
reference gene expression levels
underlying gene expression levels
initial gene expression levels
baseline gene expression analyses
baseline gene expression characteristics
baseline surface expression levels
baseline megalin expression levels
baseline gene expression data
baseline gene expression changes
baseline gene expression profiles
baseline gene expression values
baseline line expression levels
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