The paper proposes a computer-based tool based on extended Function-Behavior-State (FBS) modeling method that incorporates visualization of geometric information and introduction of an interval-temporal logic.
A web-based tool based on the above is available.
To support these data, Bestkeeper [ 19], another Excel-based tool based on pairwise correlation, was performed and showed similar results concerning the best reference genes for Brachiaria (data not shown).
We used PathExpress [ 93], a web-based tool based on the KEGG Ligand database [ 94], to detect whether probe sets associated with a metabolic pathway or sub-pathway were statistically over-represented in the differentially expressed sets of sequences (P-value ≤ 0.05).
We used PathExpress [ 68], a web-based tool based on the KEGG Ligand database [ 69], to detect whether probe sets associated with a metabolic pathway or sub-pathway were statistically over-represented in the differentially expressed sets of sequences (p ≤ 0.05).
In what follows, we show that based on a recently developed tool based on the "semi-tensor product", Boolean networks can be represented as linear discrete systems, and consequently the mRNA translation process can be modelled as a PBN which can be rigorously formulated and computationally solvable.
Here we present a preliminary attempt to characterize the influence and the timing of the solar magnetic activity on the near-Earth environment, based on quite novel tools based on concepts from information theory.
Our investigation of the influence of substitution and its context on the three-base periodicity in genes may be of great interest in analysing human genetic variation, as well as in designing gene predicting tools based on the principle of three-base periodicity.
Although the ultimate aim of a programme of work we are undertaking on measure development based on NPT is to develop 'predictive' tools based on the theory, development of an instrument for this purpose was beyond the scope of this study.
Neural networks are new methodological tools based on nonlinear models.
