In addition to a network based ranking of genes, the network signatures provide visualization that reveal the underlying interactions among the top ranked nodes.
For a real take up of any STMA based ranking of CSP, that enjoys the support of future CSC's, especially those from the business world and government agencies, a standardization body or government led initiative could be preferable.
Using a population-based ranking of the metropolitan areas (Census [2000]), industry regulators helped identify all camera and partition cities followed by eligible control cities.
Results of CBH1 production by a subset of the best strains and reference strains grown in SCD-URA medium were consistent with the results in YPD medium with regard to activity-based ranking of the best strains.
GSEA is based on ranking of the genes according to their statistical significance and comparison of the patterns to sets of predefined genes.
The second method was based on ranking of the network nodes by their average distance to all cluster genes, which was defined by the SPF.
Small differences were observed between measures based on pooled linear predictors versus pooled probabilities; we expected this finding for the AUROC measures as the estimates are based on ranks of the predictions and not their absolute values.
Over time, the different lines showed a similar response to E. amylovora (Table 3) with some difference of ranking (based of the level of resistance) between lines depending on the weather conditions during the year of inoculation.
Our approach is fundamentally based on the ranking of the relationships between genes.
This process was repeated 500 times, determining the significance based on the ranking of the SC and NC in the surrogate distributions (two-tailed, p<0.01).
