The annotation of receptor-like kinases on the phylogeny confirmed earlier efforts of receptor kinase classification based on whole sequences and extracelluar domain structures [ 50].
There are two possible ways to update the currently used Y chromosomal phylogenetic tree: first, making Tabula rasa of the current phylogenetic tree and obtaining a new phylogeny based on only the high quality whole sequenced Y-chromosomes, or secondly, controlling the current phylogeny and including new validated Y-SNPs based on whole sequenced Y-chromosomes.
After identifying homologs between mouse and viral proteins, we next asked if the similarities between homologs based on whole-sequence similarities are biased to some specific domains.
Thus, an evaluation of the conservation of synteny between Fragaria, Malus and Prunus based on whole genome sequence data may reveal much about sequence evolution in this closely-related, yet morphologically diverse family that has been hitherto undetected.
Description of data: Phylogenetic trees based on whole genome sequence (a), SNP concatemers using the consensus genome sequence as reference (b) and SNP concatemers using H37Rv genome as reference (c) were constructed using PhyML [ 37 ].
PCR primers for these targets were designed based on whole genome sequence data from C. ubiquitum.
In this study, we used INDEL markers to perform fine mapping based on whole genome sequence information.
While predicted values are based on whole protein sequence, experimental values are a function of protein subunits only detected on gels.
Ancestral genome models deduced from comparative cytogenetic analysis exhibit marked differences when compared to reconstructions of ancestral eutherian genomes based on whole genome sequence alignments [ 19, 20].
In this study, we identified the complete nuclear receptor repertoire of the copepod T. japonicus based on whole genome sequence and transcriptome data [ 30].
Further, protein predictions based upon expressed sequences (ESTs) represent 'real' proteins, so our database could potentially be used to validate ORF predictions based on whole genome sequence data alone.
