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Maximum-Likelihood dendrogram was constructed and based on tree topology, the least and most divergent variants of each clade were selected.
Simulation results show that the proposed architecture based on tree topology is able to provide triple-play services to 32 optical network units (ONUs) and transmission rates above 33 Gb/s per wavelength.
Authors in [14] establish the precursor-successor relationship among the clusters based on tree topology.
Based on tree topology, two putative R-Smads were identified.
The evaluation was considered based on tree topology as well as the reference genome's position of identifed SNPs.
Phylogenetic analysis of the MglA family members revealed five distinct groups based on tree topology and taxonomic distribution (fig. 2 A).
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Although sister-group comparisons have been criticized based on the fact that they ignore information in tree topologies [53], the large taxonomical scale of this study and the lack of an adequate (genus-level) supertree for angiosperms precluded the use of methods based on tree topologies.
For simplicity, the subgroups were designated as alphabetical families (NAC-a to NAC-r) based on tree topologies.
To explore this possibility, we constructed several large species trees by adding different number of birds to our existing trees, based on tree topologies and branch lengths from recent phylogenetic surveys (Hackett et al. 2008).
RF distances to reference trees are only a rough measure of accuracy, though, as they are based on tree topologies alone and do not take branch lengths into account.
Based on tree topologies and epidemiological information, we reclassified each dataset, such as to enable us to realistically investigate the adaptive evolution of SARS-CoVs in different hosts and during different epidemic periods.
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