Sentence examples for based on tree inference from inspiring English sources

It should be noted, however, that a number of alternative and more sophisticated methods exist to estimate divergence or duplication dates based on tree inference, even if rate heterogeneity between lineages is present.

The domain architecture data presented in Figure 2 are for the most part consistent with the placement of the new myotubularin homologues into similarity clusters based on phylogenetic tree inference data.

We use a Bayesian inference approach for studying the effect of model choice on tree inference.

The unified CART framework based on conditional inference trees embeds recursive binary partitioning into the theory of permutation tests [ 24].

> -wrap-foot> In Table 2, we compared integrative ME with a logistic regression (multinom), PLS-RF and cforest, which is based on conditional inference trees (Hothorn et al., 2006), on the combined datasets X* Z.

MrBayes (ver. 3.1.2) was used to reconstruct phylogenetic trees based on Bayesian inference [ 52].

The putative Xenopus tropicalis bHLH protein sequences, together with the human bHLH domains, were used to construct phylogenetic trees based on bayesian inference (BI) by MRBAYES 3.1.2 [ 37, 38] and maximum likelihood estimation (MLE) by PHYML 2.4.4 [ 44] with the JTT substitution frequency matrix [ 45], respectively.

We observed 23 different haplotypes among the 159 individuals [GenBank: JF510161-JF510319] (See also Additional file 2: Genotypes).. Figure 3 displays a tree reconstruction based on Bayesian inference.

Phylogenetic tree based on Bayesian phylogenetic inference.

In an attempt to reconstruct past demographic histories based on phylogenetic inferences, the tree in Fig.  1 suggests that a drastic bottleneck occurred during the Late Eurasian Saalian glacial (~130 160 ka ago) [ 36– 39], which is compatible with the age of the major macro-haplogroup A'B'C'D'G.

PolyPhy is a fast and robust method to identify polytomies from phylogenetic trees based on genome-wide inference of evolutionary relationships among genomes.