Sentence examples for based on transcription factor from inspiring English sources
The discrepancy is rather based on transcription factor activity.
In i), activation level of cis-acting sites is discretized (beyond on/off) based on transcription factor concentration (see above).
We argue that the peak scores provide more accurate approximations of the binding affinities than the methods based on transcription factor occupancy [4], [5].
The experimental identification of cis-regulatory sites based on transcription factor binding motifs (TFBMs) is a difficult and time-consuming task.
These were proposed in Ref.[8] in a different context, namely as a measure of similarity between promoter regions based on transcription factor binding site counts.
Moreover, we also inferred and incorporated potential regulatory relationships based on transcription factor binding site (TFBS) motifs into RegNetwork.
Here we analyzed another facet of this topic by distinguishing between genes involved and not involved in regulation based on transcription factors.
The Sox sub-family of HMG proteins, on the other hand, is not considered able to do so, according to a new functional classification based on transcription factors' effect on chromatin architecture [ 26, 27].
Our current understanding of the circadian clock in plants is mostly based on transcription factors that mutually repress each other (Gendron et al., 2012; Huang et al., 2012; Pokhilko et al., 2012).
In order to identify transcription factors responsible for the transcriptional control of the reactions shown in Figure 4 and Figure 5 we performed a hypergeometric enrichment test for each comparison and each transcription factor based on known transcription factor – gene interactions [ 24].
As an insight into potential TFs that regulate the genes in this network, it is noteworthy that N-regulated bicluster 9 contains 17 transcription factors (based on AGRIS transcription factor annotation) whose regulation is by definition correlated with targets in N-bicluster 9, as well as with genes from other functional and unknown categories.
