Sentence examples for based on transcript sequence from inspiring English sources

On the one hand, prediction of AS based on transcript sequence data seems to be overestimated in several filamentous fungi as cDNA-derived sequence data without supporting protein sequence data do not allow discrimination between AS and unprocessed or partially processed transcripts.

aNumber based on transcript sequence (NM_024675), +1 as A of ATG start codon.

(iii) Prediction based on transcript sequences: The assembled transcriptome sequences were aligned to the genome assembly using BLAT (Version 34) using the parameters identity ≥ 0.98 and coverage ≥ 0.98 to generate spliced alignments.

Since Medicago GeneChips are based on transcript and genomic sequences, the number of probe sets exceeds the number of genes represented.

PASA was then again utilized to update this initial genome annotation from EVM and MAKER2 to add alternate splicing and UTR sequences based on transcript data [ 4, 5, 22- 26, 26].

Until the whole genome sequence is available, it is unlikely that all the TFs can be identified based only on transcript sequences.

Genome sequence analysis is based on transcript profiling and computational analysis.

To clone the full-length coding sequences (CDSs) of UGT78K2 and OMT5, PCR primers were designed based on the transcript sequence predicted for Glyma08g07130 (http://www.phytozome.net/soybean) and based on the mRNA sequence of BT098523, respectively.

A database was constructed based on transcripts obtained from the koala mammary gland (sequencing and assembly described below).

Gene specific primers were designed based on contig transcript sequences annotated to represent homologs to AtWRI1 from previous 454-sequencing [unpublished results, 22].

Primers flanking the gap region were designed based on primary transcript sequences (Additional file 4).