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These results were based on transcript profiles generated using the Affymetrix gene chip U74Av2 which contains ~12,000 genes.
Because different rat strains are widely used in toxicology, we investigated the effect of strain differences of Wistar and Sprague-Dawley rats for classification based on transcript profiles.
We attempted to gain novel insights into GA functions in carrot growth based on transcript profiles of genes involved in hormone metabolic and signaling pathways.
Based on transcript profiles (PiceaGenExpress database [ 30]) a set of 500 gene sequences each representing a unique FL-cDNA clone that was highly expressed in all tissues was identified from the P. glauca gene catalog [ 29].
The normalized gene expression values from all the libraries were then used to estimate a Euclidian distance matrix based on transcript profiles to generate a dendrogram and a heatmap describing the similarities among the developmental stages of T. absoluta (Fig. 3).
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Genome sequence analysis is based on transcript profiling and computational analysis.
This tool has been successfully applied to model gene regulatory networks based on transcript profiling time series data of globally perturbed organisms [ 6].
Based on transcript response profiles, only members of groups I, III, IV and VII remained differentially expressed compared to control at the end of the acclimation time-period.
Based on transcript and proteome profiling of developing xylem in Populus, Kalluri et al. reported that Potri.014G089400 had enhanced EST expression and protein abundance in xylem tissue [ 29].
Therefore, a strategy to determine the physiological functions and interactions of transcription factors based on the analysis of TFA profiles would be more fundamentally sound than one based on transcript levels per se.
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