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In both T. renzhiensis and T. yunnanensis, the annotated start codon of nad1 is TTG, consistent with those in A. funestus[ 3] and M. vitrata[ 51], which were annotated based on transcript information.
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Information based on transcript and functional similarity was used to update a previously-predicted whole-genome operon map and further applied to predict transcriptional networks constituting modules enriched in diverse functions such as secondary metabolism, and sigma factor.
A qualitative study based on transcript analysis was adopted.
Based on transcript level, 433 genes were selected.
This genome annotation is based on combining transcript information from multiple databases.
Based on our transcript information, it is more likely that both ATS1 and ATS3 genes may have a regulatory role during early SE.
A study based on the transcript information of Anopheles funestus revealed that the translation initiation codon for the cox1 gene is TCG, rather than the atypical, longer codons that had been proposed earlier [ 3].
Some are based on transcripts and audio recordings, others are stories recited through the generations.
Best matching human/rhesus exon sequences were concatenated in order and orientation based on the human transcript information to create a virtual rhesus transcriptome to test probe regions for cross-hybridization potential.
We conducted the re-annotation of the IPO323 genome using a pipeline that identifies the most probable gene models based on information from transcript assemblies, homology searches, and ab initio gene predictors (Haas et al. 2011).
This is often achieved by first constructing a de Bruijn graph structure that contains all branching possibilities [ 5, 6], then obtaining predicted transcripts based on coverage information along the paths.
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