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In our analysis of bananaquit phylogeny, we adopted a multi-gene approach based on three nuclear genes as well as DNA sequences for six mitochondrial genes.
A recent comprehensive study based on three nuclear introns, mtDNA and AFLP data showed that ecotypes most likely have evolved independently in the three regions as a result of local adaptations in the face of gene flow [ 35].
The present study describes phylogenetic analysis of fescue-derived endophytes based on three nuclear protein-coding genes (tefA, tub2, perA) and the complete protein-coding gene complement of the mt genome.
Here we combine a time-calibrated molecular phylogeny based on three nuclear introns with an updated fossil stratigraphy to examine patterns of radiation and extinction in Caribbean corals within the traditional family Faviidae.
The molecular phylogeny based on three nuclear markers (28S rDNA, ef-1α, hsp82) revealed considerable discrepancies to the traditional classification of the five "circumdehiscent" subdivisions, suggesting paraphyly of the three families Scutoverticidae, Ameronothridae, Cymbaeremaeidae and also of the genus Achipteria.
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Phylogenetic analyses based on four nuclear (i.e. ITS, ACO, DEF4 and RAD51) and four plastid (i.e. atpI-atpH, matK, trnS-trnfM and ycf1) gene regions indicate that P. rungsuriyanum is nested in subgenus Paphiopedilum and is a sister to section Paphiopedilum.
Both mitochondrial COI sequence data and multilocus genotypes based on nine nuclear microsatellite loci were generated for 159 crabs collected from Tokyo and Dokai Bays.
A recent study based on six nuclear genes divided Pezizomycotina into nine major clades [ 7].
Our results based on five nuclear DNA regions corroborate the monophyly of Serpulaceae sensu Jarosch [ 50].
However, a recent hierarchical Bayesian analysis based on five nuclear markers did not yield a resolved crested newt phylogeny [ 7].
A new and taxonomically complete phylogenetic hypothesis for the relationships among holometabolous insect orders is presented based on six nuclear protein-coding genes.
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