Sentence examples for based on three alignments from inspiring English sources

We generated three-dimensional quantitative structure activity relationship (3D-QSAR) models based on three alignments for both comparative molecular field analysis (CoMFA) and comparative molecular similarity index analysis (CoMSIA) to highlight the structural requirements for thrombin protein inhibition.

We then used CHOYCE option 2/ align2d to generate 50 models based on five alignments to 1FFT, and scored them applying the local fit first.

The PAML results based on two different alignments (MUSCLE and PRANK) were only consistent for two genes, Sphinx1 and Dnr1.

We began analysis of the Melainabacteria genomes by constructing phylogenetic trees based on two concatenated alignments of broadly conserved single copy marker genes (see Materials and Methods; supplementary table S2, Supplementary Material online, and Darling et al. [2014]).

The SNPs are present in non-conserved regions of DNA not associated with regulatory potential based on seven species alignments (27) or any predicted transcription factor binding site (28).

Using MP as optimality criterion 22 bipartitions are highly supported based on all six alignments, and an additional one based on five out of six alignments.

Several graph alignment methods have been proposed towards this goal, based on three main ideas: The alignment can be based on the similarity of vertices, and map vertices onto each other that, e.g., share a certain sequence similarity (if vertices represent genes or proteins) or if aligned enzymes catalyze the same reaction (if vertices represent enzymes in a metabolic network).

Gene duplication events of MAPKKK genes in grapevine were investigated based on three criteria: 1) The alignment length covered >90% of the longer gene; 2) The aligned region had an identity >90%; 3) Only one duplication event was counted for tightly linked genes [ 47].

Our multiple analysis approach is based on eleven different automated alignments, analysed separately under the maximum likelihood criterion.

For instance, the large Fabaceae clade was not supported in any of the analyses, whereas the clade comprising mainly parasites of Caryophyllales and Ranunculales was well supported (93 98%) in analyses based on five of the six alignments.

The slider alignment is based on two steps of exact match alignments: The first step is to align the P0_Reads table with the reference database table.