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Based on this alignment a maximum likelihood phylogenetic tree was build using RAxML v8.2.4.
Based on this alignment, employers can construct a mission that leads to a fulfilling tour of duty for the employee and significant advances for the company.
Based on this alignment, the unrooted phylogentic tree was obtained using Phylip's Draw software.
Moreover, most well-defined protein structural similarity measures, e.g., the Q-score [43], S-score [44] and S-div [41], can be computed based on this alignment as well and are hence termed the "virtual (v)" structural similarity measures, such as the vQ-score, vS-score and vS-div.
Figure 2 shows a Bayesian likelihood phylogenetic tree based on this alignment.
Based on this alignment, we constructed a homology model of SNX8 as described above.
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The alignment size and RMSD based on this virtual alignment are termed the "virtual alignment size" and "virtual RMSD (vRMSD)", respectively.
Residues from PDK1 apparently equivalent with those of the consensus were selected based on this sequence alignment (see Supplementary Table S1).
Based on this indirect alignment, the RMSD for the overall functional template atoms of the catalytic triads is much larger than the one obtained based on the Galinter alignment (2.2 Å vs. 0.5 Å).
A simple conservation analysis of the amino acids based on this multiple alignment allowed us to compute conservation, quality and consensus annotation for a specific region.
A phylogenetic network based on this nucleotide alignment corroborated the CTG-specific supertree regarding the grouping of C. guilliermondii and D. hansenii as sister taxa to the exclusion of C. lusitianiae.
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