In this work we used the predicted TF binding site motifs for a group of 15,476 genes in the human genome where 66 of them were known to be regulated by the Wnt/β-catenin pathway [ 38] to build a decision rule classifying genes as Wnt/β-catenin pathway target candidates based on the occurrences of these TF binding site motifs in their upstream regions.
Moreover, for obtaining the TFCM features, once each sub-image is converted to a texture feature number, a 12-element feature vector is generated based on these co-occurrence matrices and texture feature number histograms.
As these organisms have a separate purK-like gene, these PurE enzymes only need to perform the class I function, which we expect based on these organisms' occurrence in cool, aerobic environments.
They also manually calculated a sentence's score based on the occurrence of these criteria in a given sentence and identified the sentence as informative if the score was higher than a threshold (Pino et al., 2008).
Based on the occurrence of these conserved residues and our results with regard to hydrolysis of chitin oligosaccharides, it is tempting to assume that BthChi74 may be an exo-type chitinase acting in a processive manner, similarly to LinChi78, as previously reported (Honda et al. 2016).
Based on the occurrence of these proteins, phages were classified into 4 Types and their relationships with known morphological subfamilies (Siphoviridae, Myoviridae, and Podoviridae) were defined.
Instead, KvarQ loads "testsuites" that define specific SNPs or short regions of interest in a reference genome, and directly synthesizes the relevant results based on the occurrence of these markers in the fastq files.
Based on the occurrence of these gene clusters in many environmental Gram-positive bacteria, we postulate a role in degradation and utilization of (complex) plant polysaccharides, and possibly other food polysaccharides.
A composite criterion was then built based on the occurrence of at least one of these 3 types of maternal complications.
Eighteen of these were based on the occurrence of identified specimens from the type localities (topotypes) within the GMYC species cluster, and three were based on unambiguous identifications (Table 4).
